Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-132/megassr/results/hub_GCF_041024585.1/fasta/hub_GCF_041024585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           4735179
Total number of identified SSRs:                 27
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	10
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
CA	-	-	-	1																		1
ACC	-	-	1																			1
TAA	-	-	1																			1
TTA	-	-	1																			1
AAAAC	1																					1
AAAAT	2																					2
AAATA	2																					2
AATAA	1																					1
ATTTA				1																		1
GTAGG	1																					1
TTATT	1																					1
TTTTC	1																					1
AATGGC			1																			1
ACGAAT	1																					1
ATTTAT																					1	1
CCAACA		2	1																			3
CTGCAA	1																					1
GCTGCA	1																					1
TGAATG	1																					1
TGGCTC		1																				1
TGGTTC												1										1
TTGAAG	1																					1
TTTTTC			1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
AC/GT	-	-	-	1																		1
AAT/ATT	-	-	2																			2
ACC/GGT	-	-	1																			1
AAAAC/GTTTT	1																					1
AAAAG/CTTTT	1																					1
AAAAT/ATTTT	6																					6
AAATT/AATTT				1																		1
ACCCT/AGGGT	1																					1
AAAAAG/CTTTTT			1																			1
AAATAT/ATATTT																					1	1
AACACC/GGTGTT		2	1																			3
AACCAG/CTGGTT												1										1
AACTGC/AGTTGC	1																					1
AACTTC/AAGTTG	1																					1
AATACG/ATTCGT	1																					1
AATGGC/ATTGCC			1																			1
AATGTG/ACATTC	1																					1
AGAGCC/CTCTGG		1																				1
AGCTGC/AGCTGC	1																					1
