Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-130/megassr/results/hub_GCF_041024565.1/fasta/hub_GCF_041024565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22
Total size of examined sequences (bp):           5096699
Total number of identified SSRs:                 25
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	10
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
TG	-	-	-	1											1
TAA	-	-	2												2
TGG	-	-	1												1
AAAAG	1														1
AAATA	1														1
AGAAA	1														1
ATTTA		1													1
ATTTT	2														2
GTAGG	1														1
GTTTT	1														1
TTATT	1														1
TTTTA	1														1
AAAGAA			1												1
AAATAT														1	1
ATTCGT	1														1
CACATT	1														1
CTTCAA	1														1
GCCCCA	1														1
GTTGGT	1		1												2
TGCAGC	1														1
TGCCAT				1											1
TTGGTG			1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AAT/ATT	-	-	2												2
ACC/GGT	-	-	1												1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	2														2
AAAAT/ATTTT	5														5
AAATT/AATTT		1													1
ACCCT/AGGGT	1														1
AAAAAG/CTTTTT			1												1
AAATAT/ATATTT														1	1
AACACC/GGTGTT	1		2												3
AACTTC/AAGTTG	1														1
AATACG/ATTCGT	1														1
AATGGC/ATTGCC				1											1
AATGTG/ACATTC	1														1
AGCCCC/CTGGGG	1														1
AGCTGC/AGCTGC	1														1
