Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-129/megassr/results/hub_GCF_041024545.1/fasta/hub_GCF_041024545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           4901099
Total number of identified SSRs:                 30
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	12
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
TG	-	-	-	1																		1
TAA	-	-	1																			1
TGG	-	-	1																			1
TTA	-	-	1																			1
AAAAG	1																					1
AAATA	1																					1
AGAAA	1																					1
ATTAA				1																		1
ATTTT	3																					3
GTAGG	1																					1
GTTTT	1																					1
TATTT	1																					1
TTATT	1																					1
TTTTA	1																					1
AAAGAA			1																			1
AAATAT																					1	1
AGAACC												1										1
AGAGCC		1																				1
ATTCGT	1																					1
CACATT	1																					1
CTGCAA	1																					1
CTTCAA	1																					1
GTTGGT		1	1																			2
TATTTT				1																		1
TGCAGC	1																					1
TGCCAT			1																			1
TTGGTG		1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
AC/GT	-	-	-	1																		1
AAT/ATT	-	-	2																			2
ACC/GGT	-	-	1																			1
AAAAC/GTTTT	1																					1
AAAAG/CTTTT	2																					2
AAAAT/ATTTT	7																					7
AAATT/AATTT				1																		1
ACCCT/AGGGT	1																					1
AAAAAG/CTTTTT			1																			1
AAAAAT/ATTTTT				1																		1
AAATAT/ATATTT																					1	1
AACACC/GGTGTT		2	1																			3
AACCAG/CTGGTT												1										1
AACTGC/AGTTGC	1																					1
AACTTC/AAGTTG	1																					1
AATACG/ATTCGT	1																					1
AATGGC/ATTGCC			1																			1
AATGTG/ACATTC	1																					1
AGAGCC/CTCTGG		1																				1
AGCTGC/AGCTGC	1																					1
