Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_041024535.1/fasta/hub_GCF_041024535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7
Total size of examined sequences (bp):           2670728
Total number of identified SSRs:                 10
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	1	1
TA	-	-	-	1	1
TAA	-	-	1		1
AAAAT	1				1
ATAAC	1				1
TTAAA	1				1
TTATT	1				1
TATAAC	1				1
TCTGCA	1				1
TTTGAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	1	1
AAT/ATT	-	-	1		1
AAAAT/ATTTT	2				2
AAATT/AATTT	1				1
AACAT/ATGTT	1				1
AAAATC/ATTTTG	1				1
AACTAT/AGTTAT	1				1
AGATGC/ATCTGC	1				1
