Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_041024465.1/fasta/hub_GCF_041024465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4746879
Total number of identified SSRs:                 19
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CA	-	-	-									1	1
ACC	-	-	1										1
TAA	-	-	1										1
TATT	-	1											1
AAAAC	1												1
AAATA	1												1
AGAAA	1												1
ATTAA		1											1
CCTAC	1												1
CTTTT	1												1
TTATT	1												1
AATGGC			1										1
ACGAAT	1												1
CACATT	1												1
CCAACA												1	1
GCTGCA	1												1
GGTGTT	1												1
TTGAAG	1												1
TTTTTC		1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-									1	1
AAT/ATT	-	-	1										1
ACC/GGT	-	-	1										1
AAAT/ATTT	-	1											1
AAAAC/GTTTT	1												1
AAAAG/CTTTT	2												2
AAAAT/ATTTT	2												2
AAATT/AATTT		1											1
ACCCT/AGGGT	1												1
AAAAAG/CTTTTT		1											1
AACACC/GGTGTT	1											1	2
AACTTC/AAGTTG	1												1
AATACG/ATTCGT	1												1
AATGGC/ATTGCC			1										1
AATGTG/ACATTC	1												1
AGCTGC/AGCTGC	1												1
