Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_041024385.1/fasta/hub_GCF_041024385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              11
Total size of examined sequences (bp):           4707871
Total number of identified SSRs:                 22
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	10
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
ACC	-	-	1		1
GAT	-	-	1		1
ACAA	-	1			1
AAAAC	1				1
AAAAT	3				3
AATAA	1				1
ATTAA		1			1
GAGGG	1				1
TTATT	1				1
TTTAT	1				1
TTTTC	1				1
AATGGC		1			1
ACGAAT	1				1
CACCAA	1				1
CCAACA	1				1
CCAACC		1			1
CTATTT	1				1
TCTCCA		1			1
TTGAAG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
ACC/GGT	-	-	1		1
ATC/ATG	-	-	1		1
AAAC/GTTT	-	1			1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	6				6
AAATT/AATTT		1			1
AGGGG/CCCCT	1				1
AAATAG/ATTTCT	1				1
AACACC/GGTGTT	2				2
AACCCC/GGGGTT		1			1
AACTTC/AAGTTG	1				1
AATACG/ATTCGT	1				1
AATGGC/ATTGCC		1			1
AGATGG/ATCTCC		1			1
