Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCF_041024355.1/fasta/hub_GCF_041024355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           2861136
Total number of identified SSRs:                 16
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	9
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	2			2
TA	-	-	-			1	1
ATC	-	-	1				1
GAA	-	-	1				1
TTC	-	-	1				1
AATAA	1						1
AATAC	1						1
AATTT	1						1
AGTAC	1						1
ATTCT	1						1
CAACA	1						1
GTATT	3						3
GATGAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	2		1	3
AAG/CTT	-	-	2				2
ATC/ATG	-	-	1				1
AAAAT/ATTTT	1						1
AAATT/AATTT	1						1
AACAC/GTGTT	1						1
AATAC/ATTGT	4						4
AATAG/ATTCT	1						1
ACAGT/ACTGT	1						1
AAGATG/ATCTTC	1						1
