Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-129/megassr/results/hub_GCF_041024195.1/fasta/hub_GCF_041024195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           2615117
Total number of identified SSRs:                 19
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	1
5	5
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
ATT	-	-	1		1
TTTA	-	1			1
AATAC	1				1
TATTA	1				1
TTGTT	1				1
TTTTG	2				2
GCATCT	2				2
GTCTGC	2	1			3
TCTGCG	2	3			5

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAT/ATT	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	3				3
AATAC/ATTGT	1				1
AATAT/ATATT	1				1
ACGCAG/CGTCTG	4	4			8
AGATGC/ATCTGC	2				2
