Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-123/megassr/results/hub_GCF_041024145.1/fasta/hub_GCF_041024145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              11
Total size of examined sequences (bp):           4645857
Total number of identified SSRs:                 22
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	3
5	9
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1	1
CA	-	-	-	1																											1
ACC	-	-	1																												1
TTA	-	-	2																												2
AAAAC	1																														1
AAAAT	2																														2
AATAA	1																														1
ATTTA		1																													1
TTATT	1																														1
TTCTT	1																														1
TTTTA	1																														1
TTTTC	1																														1
AAAGAA			1																												1
ACGAAT	1																														1
ATTTAT													1																		1
CCAACA				1																											1
CTTCAA	1																														1
GCTGCA	1																														1
TGAATG	1																														1
TGCCAT				1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1	1
AC/GT	-	-	-	1																											1
AAT/ATT	-	-	2																												2
ACC/GGT	-	-	1																												1
AAAAC/GTTTT	1																														1
AAAAG/CTTTT	2																														2
AAAAT/ATTTT	5																														5
AAATT/AATTT		1																													1
AAAAAG/CTTTTT			1																												1
AAATAT/ATATTT													1																		1
AACACC/GGTGTT				1																											1
AACTTC/AAGTTG	1																														1
AATACG/ATTCGT	1																														1
AATGGC/ATTGCC				1																											1
AATGTG/ACATTC	1																														1
AGCTGC/AGCTGC	1																														1
