Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_041024105.1/fasta/hub_GCF_041024105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              15
Total size of examined sequences (bp):           4639325
Total number of identified SSRs:                 22
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	9
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
ACC	-	-	1		1
TTA	-	-	2		2
AAAAC	1				1
AAAAT	2				2
AAATA	1				1
AATAA	1				1
ATTAA		1			1
TTATT	1				1
TTCTT	1				1
TTTTC	1				1
AATGGC				1	1
ACGAAT	1				1
CCAACA	1		1		2
GCAACC	1				1
GCTGCA	1				1
TGAATG	1				1
TTGAAG	1				1
TTTTTC			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAT/ATT	-	-	2		2
ACC/GGT	-	-	1		1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	2				2
AAAAT/ATTTT	5				5
AAATT/AATTT		1			1
AAAAAG/CTTTTT			1		1
AACACC/GGTGTT	1		1		2
AACCGC/CGGTTG	1				1
AACTTC/AAGTTG	1				1
AATACG/ATTCGT	1				1
AATGGC/ATTGCC				1	1
AATGTG/ACATTC	1				1
AGCTGC/AGCTGC	1				1
