Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_041024025.1/fasta/hub_GCF_041024025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           5955332
Total number of identified SSRs:                 42
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
5	8
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
CG	-	-	-	2	1	1																4
GA	-	-	-	1																		1
GC	-	-	-	1		1																2
CAG	-	-	1																			1
CGC	-	-	2																			2
CGG	-	-	1																			1
CTG	-	-	2																			2
GCC	-	-		1																		1
GCT	-	-	2																			2
GTG	-	-	1																			1
CAGCG	1																					1
CGCCA	1																					1
CGCCG	1																					1
CGCGC	1																					1
GCAGG		1																				1
GCGCC	1																					1
GCGCG		1																				1
TTATC	1																					1
ACGAAC			1																			1
ACGACA	1																					1
CGCCAG	1																					1
CGCCCT	1																					1
CGGAAG				1																		1
CTGACC	1																					1
CTGGCG	2																					2
CTGGCT																					1	1
GAAGTC	1																					1
GCGCCA	1																					1
GCGCCT	1																					1
GCTGGC	2																					2
GGCGCA		1																				1
GTGGAA	1																					1
TGGCAA										1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
AG/CT	-	-	-	1																		1
CG/CG	-	-	-	3	1	2																6
ACC/GGT	-	-	1																			1
AGC/CTG	-	-	5																			5
CCG/CGG	-	-	3	1																		4
AAGAT/ATCTT	1																					1
ACGCC/CGTGG	1																					1
AGCGC/CGCTG	1																					1
AGGGC/CCCTG		1																				1
CCGCG/CGCGG	3	1																				4
AACACG/CGTGTT			1																			1
AACGAC/CGTTGT	1																					1
AAGCGG/CCGCTT				1																		1
AAGTCG/ACTTCG	1																					1
AAGTGG/ACTTCC	1																					1
AATGGC/ATTGCC										1												1
ACCCTG/AGGGTC	1																					1
AGAGCC/CTCTGG																					1	1
AGCGCC/CGCTGG	6																					6
AGGCGC/CCTGCG	1	1																				2
AGGGCG/CCCTCG	1																					1
