Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_041023975.1/fasta/hub_GCF_041023975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           4634105
Total number of identified SSRs:                 16
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TAA	-	-	1		1
TGG	-	-	1		1
AAGAA	1				1
AGAAA	1				1
ATTTA		1			1
GTTTT	1				1
TTATT	1				1
TTTTA	1				1
AAAGAA		1			1
AACACC	1				1
ATTCGT	1				1
CACATT	1				1
CTTCAA	1				1
TGCAGC	1				1
TGCCAT			1		1
TTGGTG				1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAT/ATT	-	-	1		1
ACC/GGT	-	-	1		1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	2				2
AAAAT/ATTTT	2				2
AAATT/AATTT		1			1
AAAAAG/CTTTTT		1			1
AACACC/GGTGTT	1			1	2
AACTTC/AAGTTG	1				1
AATACG/ATTCGT	1				1
AATGGC/ATTGCC			1		1
AATGTG/ACATTC	1				1
AGCTGC/AGCTGC	1				1
