Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-144/megassr/results/hub_GCF_041023935.1/fasta/hub_GCF_041023935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              132
Total size of examined sequences (bp):           4918822
Total number of identified SSRs:                 20
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	5
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-		1	1
TG	-	-	-	1		1
TAA	-	-	1			1
TGG	-	-	1			1
AAAAT	1					1
AGAAA	1					1
ATTAA	1					1
GTTTT	1					1
TTATT	1					1
AAAGTC	1					1
AGAGCC	1					1
ATTATG				1		1
ATTCGT	1					1
CACATT	1					1
GCTGCA	1					1
TGCCAT			1			1
TTCATT	1					1
TTGAAG	1					1
TTGGTG				1		1
TTTTTC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-	1		1
AT/AT	-	-	-		1	1
AAT/ATT	-	-	1			1
ACC/GGT	-	-	1			1
AAAAC/GTTTT	1					1
AAAAG/CTTTT	1					1
AAAAT/ATTTT	2					2
AAATT/AATTT	1					1
AAAAAG/CTTTTT	1					1
AAAATG/ATTTTC	1					1
AAAGTC/ACTTTG	1					1
AACACC/GGTGTT				1		1
AACTTC/AAGTTG	1					1
AATACG/ATTCGT	1					1
AATCAT/ATGATT				1		1
AATGGC/ATTGCC			1			1
AATGTG/ACATTC	1					1
AGAGCC/CTCTGG	1					1
AGCTGC/AGCTGC	1					1
