Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCF_041023665.1/fasta/hub_GCF_041023665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              15
Total size of examined sequences (bp):           4828672
Total number of identified SSRs:                 21
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	7
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AT	-	-	-			1													1
TG	-	-	-	1															1
TGG	-	-	1																1
TTA	-	-	1																1
AGAAA	1																		1
ATTAA	1																		1
ATTTA		1																	1
ATTTT	2																		2
GTTTT	1																		1
TTATT	1																		1
AAATAT																		1	1
AATCAT					1														1
AGAAAA	1																		1
ATGACG			1																1
ATTCGT	1																		1
CACATT	1																		1
CTTCAA	1																		1
TGCAGC	1																		1
TTGGCG	1																		1
TTGGTG													1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AC/GT	-	-	-	1															1
AT/AT	-	-	-			1													1
AAT/ATT	-	-	1																1
ACC/GGT	-	-	1																1
AAAAC/GTTTT	1																		1
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	3																		3
AAATT/AATTT	1	1																	2
AAAAAG/CTTTTT	1																		1
AAATAT/ATATTT																		1	1
AACACC/GGTGTT													1						1
AACGCC/CGTTGG	1																		1
AACTTC/AAGTTG	1																		1
AATACG/ATTCGT	1																		1
AATCAT/ATGATT					1														1
AATGTG/ACATTC	1																		1
ACGATG/ATCGTC			1																1
AGCTGC/AGCTGC	1																		1
