Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_041023455.1/fasta/hub_GCF_041023455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           4669838
Total number of identified SSRs:                 28
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	2
5	9
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-														1																					1	2
AC	-	-	-	1																																																	1
CA	-	-	-	1																																																	1
TA	-	-	-	1																																																	1
TGG	-	-	1																																																		1
TTA	-	-	1																																																		1
AAAAG	1																																																				1
AAAAT	1																																																				1
AAATA	1																																																				1
ATTAA		1																																																			1
GTTTT	1																																																				1
TTATT	2																																																				2
TTCTT	1																																																				1
TTTTC	1																																																				1
AAAGAA			1																																																		1
AAATAT														1																																							1
AATGGC				2																																																	2
ATTCGT	1																																																				1
CTTCAA	1																																																				1
GCAACC	1																																																				1
GCTGCA	1																																																				1
GTTGGT	1		1																																																		2
TGAATG	1																																																				1
TTGGTG			1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-														1																					1	2
AC/GT	-	-	-	2																																																	2
AT/AT	-	-	-	1																																																	1
AAT/ATT	-	-	1																																																		1
ACC/GGT	-	-	1																																																		1
AAAAC/GTTTT	1																																																				1
AAAAG/CTTTT	3																																																				3
AAAAT/ATTTT	4																																																				4
AAATT/AATTT		1																																																			1
AAAAAG/CTTTTT			1																																																		1
AAATAT/ATATTT														1																																							1
AACACC/GGTGTT	1		2																																																		3
AACCGC/CGGTTG	1																																																				1
AACTTC/AAGTTG	1																																																				1
AATACG/ATTCGT	1																																																				1
AATGGC/ATTGCC				2																																																	2
AATGTG/ACATTC	1																																																				1
AGCTGC/AGCTGC	1																																																				1
