Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_041023365.1/fasta/hub_GCF_041023365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           4992623
Total number of identified SSRs:                 21
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
ACG	-	-	1		1
CAG	-	-	1		1
CCA	-	-	1		1
CCG	-	-	2		2
GCC	-	-	2		2
GCT	-	-	1		1
GGC	-	-	1		1
GTG	-	-	1		1
AACAA	1				1
CGCGC	1				1
GACGT	1				1
GCGCC	1				1
ATAAAA	1				1
CGCCAG	1				1
GAAGTC	1				1
GCGCCA	1				1
GCGCTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
ACC/GGT	-	-	2		2
ACG/CGT	-	-	1		1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5		5
AAAAC/GTTTT	1				1
ACGTC/ACGTG	1				1
CCGCG/CGCGG	2				2
AAAAAT/ATTTTT	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	3				3
