Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_041023325.1/fasta/hub_GCF_041023325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           4924515
Total number of identified SSRs:                 24
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	8
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT	-	-	-		1										1
TG	-	-	-	1											1
TAA	-	-	1												1
TGG	-	-	1												1
AAAT	-													1	1
AAAAT	1														1
AGAAA	1														1
ATTAA	1														1
ATTTA	1														1
ATTTT	2														2
GTTTT	1														1
TTATT	1														1
AAAATG	1														1
AATCAT				1											1
AGAAAA	1														1
ATTCGT	1														1
CACATT	1														1
CTTCAA	1														1
TCTGGC	1														1
TGCAGC	1														1
TGCCAT			1												1
TTGGTG												1			1
TTTGAC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AT/AT	-	-	-		1										1
AAT/ATT	-	-	1												1
ACC/GGT	-	-	1												1
AAAT/ATTT	-													1	1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	1														1
AAAAT/ATTTT	4														4
AAATT/AATTT	2														2
AAAAAG/CTTTTT	1														1
AAAATG/ATTTTC	1														1
AAAGTC/ACTTTG	1														1
AACACC/GGTGTT												1			1
AACTTC/AAGTTG	1														1
AATACG/ATTCGT	1														1
AATCAT/ATGATT				1											1
AATGGC/ATTGCC			1												1
AATGTG/ACATTC	1														1
AGAGCC/CTCTGG	1														1
AGCTGC/AGCTGC	1														1
