Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-117/megassr/results/hub_GCF_041023315.1/fasta/hub_GCF_041023315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           5505172
Total number of identified SSRs:                 36
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	15
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
GC	-	-	-	1		1
CAG	-	-	1			1
CCA	-	-	1			1
CCG	-	-	2			2
CGC	-	-	1			1
CGG	-	-	1			1
CTG	-	-	2			2
GAC	-	-	1			1
GCA	-	-	1			1
GCC	-	-	2	1		3
GGC	-	-	2			2
AATAA	1					1
CCACG	1					1
CCCGG	1					1
CCGCG	1					1
GCAGT	1					1
GGCGC	1					1
TATTG	1					1
TTTAT	1					1
CTGGTG	1					1
GAAGTC	1					1
GCGCTG	1					1
GCTCCG		1				1
GCTCCT	1					1
GGCCAG	1					1
GTGGAA	1					1
TCTTCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
CCG/CGG	-	-	8	1		9
AAAAT/ATTTT	2					2
AATAC/ATTGT	1					1
ACGCC/CGTGG	1					1
ACTGC/AGTGC	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
AGCAGG/CCTGCT	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGGGCC/CCCTGG	1					1
