Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_041023285.1/fasta/hub_GCF_041023285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           4785781
Total number of identified SSRs:                 20
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
TA	-	-	-	2			2
ACC	-	-	1				1
CAG	-	-	1				1
TGC	-	-	1				1
AAAT	-	1					1
AAAAT	1						1
AAATG	1						1
CTTTA	1						1
GTAGG	1						1
TATGT	1						1
TATTA	1						1
AAATAA			1				1
AGTTTG						1	1
ATATTG	1						1
ATCGAT	1						1
CTTCTG	1						1
TATTGA	1						1
TTAATT				1			1
TTCTGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	2			2
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2				2
AAAT/ATTT	-	1					1
AAAAT/ATTTT	1						1
AAAGT/ACTTT	1						1
AAATG/ATTTC	1						1
AACAT/ATGTT	1						1
AATAT/ATATT	1						1
ACCCT/AGGGT	1						1
AAAAAT/ATTTTT			1				1
AAAATT/AATTTT				1			1
AAACTC/AGTTTG						1	1
AAGCAG/CTGCTT	2						2
AATATC/ATATTG	2						2
ATATCG/ATATCG	1						1
