Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCF_041023275.1/fasta/hub_GCF_041023275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           4237624
Total number of identified SSRs:                 30
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	10
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AC	-	-	-	1										1
AG	-	-	-	1										1
ATG	-	-	1											1
GTG	-	-	1											1
TGA	-	-	1											1
CTTT	-	1												1
AAAAT	2													2
AAATG	1													1
AATAA	1													1
AATTA	1													1
AGGTT	1													1
ATTTT	1													1
GTAGG	1													1
TATTT	1													1
TCTTC	1													1
AAATAA	1													1
ATGGAA				1										1
CATTAT			1											1
CTGCAA	1													1
GCAGAA	1													1
GGGTTA	1													1
GTATCA			1											1
TATCAA	1													1
TGAAAA	1													1
TGAGCC													1	1
TGCAGC	1													1
TTGCTG											1			1
TTGTGC	1													1
TTTATT	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AC/GT	-	-	-	1										1
AG/CT	-	-	-	1										1
ACC/GGT	-	-	1											1
ATC/ATG	-	-	2											2
AAAG/CTTT	-	1												1
AAAAT/ATTTT	5													5
AAATG/ATTTC	1													1
AAATT/AATTT	1													1
AACCT/AGGTT	1													1
AAGAG/CTCTT	1													1
ACCCT/AGGGT	1													1
AAAAAT/ATTTTT	2													2
AAAATG/ATTTTC	1													1
AAATGG/ATTTCC				1										1
AACAGC/CTGTTG											1			1
AACCCT/AGGGTT	1													1
AACTGC/AGTTGC	1													1
AAGCAC/CTTGTG	1													1
AAGCAG/CTGCTT	1													1
AATATC/ATATTG	1													1
AATGAT/ATCATT			1											1
ACTGAT/AGTATC			1											1
AGCCTG/AGGCTC													1	1
AGCTGC/AGCTGC	1													1
