Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-129/megassr/results/hub_GCF_041023215.1/fasta/hub_GCF_041023215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              18
Total size of examined sequences (bp):           4730841
Total number of identified SSRs:                 19
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
TA	-	-	-	2				2
CAG	-	-	1					1
GGT	-	-	1					1
TGC	-	-	1					1
AAAT	-	1						1
AAAAT	1							1
AAATG	1							1
CCTAC	1							1
CTTTA	1							1
TAATA	1							1
AAGCAG	1							1
AGTTTG							1	1
ATATTG	1							1
ATCGAT	1							1
CTTCTG	1							1
TATCAA	1							1
TTGCAG	1							1
TTTTTA			1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	2				2
ACC/GGT	-	-	1					1
AGC/CTG	-	-	2					2
AAAT/ATTT	-	1						1
AAAAT/ATTTT	1							1
AAAGT/ACTTT	1							1
AAATG/ATTTC	1							1
AATAT/ATATT	1							1
ACCCT/AGGGT	1							1
AAAAAT/ATTTTT			1					1
AAACTC/AGTTTG							1	1
AACTGC/AGTTGC	1							1
AAGCAG/CTGCTT	2							2
AATATC/ATATTG	2							2
ATATCG/ATATCG	1							1
