Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_041023145.1/fasta/hub_GCF_041023145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           2561549
Total number of identified SSRs:                 16
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
TA	-	-	-	1				1	2
ATT	-	-	1						1
TTTA	-	1							1
TATTA	1								1
TTGTT	1								1
TTTTG	2								2
ATCTGC	2								2
GCATCT	1	1							2
TCTGCA	4								4

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1				1	2
AAT/ATT	-	-	1						1
AAAT/ATTT	-	1							1
AAAAC/GTTTT	3								3
AATAT/ATATT	1								1
AGATGC/ATCTGC	7	1							8
