Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCF_041023135.1/fasta/hub_GCF_041023135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              18
Total size of examined sequences (bp):           3890607
Total number of identified SSRs:                 19
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	2
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-				1		1
TA	-	-	-	1					1
ATA	-	-	1						1
GGT	-	-	1						1
ATAG	-		1						1
CTAT	-	1							1
AAAAT	1								1
AATCG	1								1
CGATT	1								1
TTTTA	1								1
ACCAGC					1				1
AGCTAC		1							1
ATATGA			1						1
ATCTTC						1			1
CCAGCT								1	1
CTGTTG		1							1
TCATAT			1						1
TCCTTA			1						1
TTTTAT		1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1			1		2
AAT/ATT	-	-	1						1
ACC/GGT	-	-	1						1
AGAT/ATCT	-	1	1						2
AAAAT/ATTTT	2								2
AATCG/ATTCG	2								2
AAAAAT/ATTTTT		1							1
AACAGC/CTGTTG		1							1
AAGATG/ATCTTC						1			1
AAGGAT/ATCCTT			1						1
AATATG/ATATTC			2						2
ACAGCT/AGCTGT		1							1
ACCAGC/CTGGTG					1				1
AGCTCC/AGCTGG								1	1
