Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_041023125.1/fasta/hub_GCF_041023125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              32
Total size of examined sequences (bp):           5051233
Total number of identified SSRs:                 20
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	7
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
TG	-	-	-	1									1
TAA	-	-	1										1
TGG	-	-	1										1
AGAAA	1												1
ATTAA	1												1
ATTTA		1											1
ATTTT	2												2
GTTTT	1												1
TTATT	1												1
AAATAT												1	1
AATCAT					1								1
AGAAAA	1												1
ATTCGT	1												1
CACATT	1												1
CTTCAA	1												1
TCATCG			1										1
TGCAGC	1												1
TTGGCG	1												1
TTGGTG									1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	1									1
AAT/ATT	-	-	1										1
ACC/GGT	-	-	1										1
AAAAC/GTTTT	1												1
AAAAG/CTTTT	1												1
AAAAT/ATTTT	3												3
AAATT/AATTT	1	1											2
AAAAAG/CTTTTT	1												1
AAATAT/ATATTT												1	1
AACACC/GGTGTT									1				1
AACGCC/CGTTGG	1												1
AACTTC/AAGTTG	1												1
AATACG/ATTCGT	1												1
AATCAT/ATGATT					1								1
AATGTG/ACATTC	1												1
ACGATG/ATCGTC			1										1
AGCTGC/AGCTGC	1												1
