Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_041023035.1/fasta/hub_GCF_041023035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           5280912
Total number of identified SSRs:                 15
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	1	1
GC	-	-	-	1	1
CCG	-	-	4		4
CGT	-	-	1		1
GCA	-	-	1		1
TCA	-	-	1		1
TGA	-	-	1		1
CGTGTT			1		1
GAAGTC	1				1
GCACCA	1				1
TCTTCA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	2	2
ACG/CGT	-	-	1		1
AGC/CTG	-	-	1		1
ATC/ATG	-	-	2		2
CCG/CGG	-	-	4		4
AACACG/CGTGTT			1		1
AAGATG/ATCTTC	1				1
AAGTCG/ACTTCG	1				1
ACCAGC/CTGGTG	1				1
