Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_041023025.1/fasta/hub_GCF_041023025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7
Total size of examined sequences (bp):           2634266
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
GC	-	-	-																																	1																																							1	2
TA	-	-	-	2																																																																								2
ATT	-	-	1																																																																									1
TTTA	-	1																																																																										1
AATAC	1																																																																											1
TATTA	1																																																																											1
TTGTT	1																																																																											1
TTTTG	2																																																																											2
GCATCT	1																																																																											1
GTCTGC	1																																																																											1
TCTGCG	1	3																																																																										4

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
AT/AT	-	-	-	2																																																																								2
CG/CG	-	-	-																																	1																																							1	2
AAT/ATT	-	-	1																																																																									1
AAAT/ATTT	-	1																																																																										1
AAAAC/GTTTT	3																																																																											3
AATAC/ATTGT	1																																																																											1
AATAT/ATATT	1																																																																											1
ACGCAG/CGTCTG	2	3																																																																										5
AGATGC/ATCTGC	1																																																																											1
