Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-110/megassr/results/hub_GCF_041023015.1/fasta/hub_GCF_041023015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           2784399
Total number of identified SSRs:                 16
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	2
4	1
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-		1	1
TA	-	-	-	3		3
TG	-	-	-	1		1
AAT	-	-	1			1
TTC	-	-	1			1
TTAT	-	1				1
AAATC	1					1
ATAAT	1					1
TAAAA	1					1
TATAT	1					1
TTTTA	1					1
AAAGAC	1					1
AAATTT	1					1
ATCAAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-	1		1
AT/AT	-	-	-	3	1	4
AAG/CTT	-	-	1			1
AAT/ATT	-	-	1			1
AAAT/ATTT	-	1				1
AAAAT/ATTTT	2					2
AAATC/ATTTG	1					1
AATAT/ATATT	2					2
AAAATC/ATTTTG	1					1
AAAGAC/CTTTGT	1					1
AAATTT/AAATTT	1					1
