Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCF_041022885.1/fasta/hub_GCF_041022885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           2642620
Total number of identified SSRs:                 12
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
GAA	-	-	2		2
TGA	-	-	1		1
TTC	-	-	1		1
AAATT	1				1
AATTT		1			1
TGTTG	1				1
TTATT		1			1
TTCATC	1				1
TTTGAT	1				1
TTTTAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAG/CTT	-	-	3		3
ATC/ATG	-	-	1		1
AAAAT/ATTTT		1			1
AAATT/AATTT	1	1			2
AACAC/GTGTT	1				1
AAAAAT/ATTTTT	1				1
AAAATC/ATTTTG	1				1
AAGATG/ATCTTC	1				1
