Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-123/megassr/results/hub_GCF_041022835.1/fasta/hub_GCF_041022835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2544629
Total number of identified SSRs:                 17
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	2						2
TA	-	-	-	1					1	2
ATT	-	-	1							1
TTTA	-	1								1
TATTA	1									1
TTGTT	1									1
TTTTG	2									2
ATCTGC	2									2
GCATCT	2	1								3
TCTGCA	2									2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	3					1	4
AAT/ATT	-	-	1							1
AAAT/ATTT	-	1								1
AAAAC/GTTTT	3									3
AATAT/ATATT	1									1
AGATGC/ATCTGC	6	1								7
