Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_041022815.1/fasta/hub_GCF_041022815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           4985001
Total number of identified SSRs:                 22
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
4	1
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
ACG	-	-	1			1
CCG	-	-	2			2
CGC	-	-	1	1		2
CTG	-	-	1			1
GCC	-	-	2			2
GCT	-	-	1			1
GGC	-	-	1			1
GAGT	-	1				1
AACAA	1					1
CGCGC	1					1
GACGT	1					1
GCGTG					1	1
GGCGC	1					1
CGACTT	1					1
CGCCAG	1					1
GCGCCA	1					1
GTGCTG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	2		2
ACG/CGT	-	-	1			1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	6	1		7
ACTC/AGTG	-	1				1
AAAAC/GTTTT	1					1
ACGCC/CGTGG					1	1
ACGTC/ACGTG	1					1
CCGCG/CGCGG	2					2
AAGTCG/ACTTCG	1					1
ACCAGC/CTGGTG	1					1
AGCGCC/CGCTGG	2					2
