Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-137/megassr/results/hub_GCF_041022755.1/fasta/hub_GCF_041022755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              9
Total size of examined sequences (bp):           4744217
Total number of identified SSRs:                 23
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
4	2
5	10
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TG	-	-	-	1	1
CAT	-	-	1		1
CCG	-	-	1		1
GAT	-	-	1		1
TGG	-	-	1		1
AATG	-	1			1
TTGT	-	1			1
AAAAT	1				1
AATAA	1				1
AGAAA	1				1
ATTTA		1			1
ATTTT	2				2
CCCTC	1				1
GTTTT	1				1
TATTT	1				1
TTATT	1				1
AAATAG	1				1
ATGGAG		1			1
ATTCGT	1				1
CTTCAA	1				1
TGCCAT		1			1
TGGTGT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
ACC/GGT	-	-	1		1
ATC/ATG	-	-	2		2
CCG/CGG	-	-	1		1
AAAC/GTTT	-	1			1
AATG/ATTC	-	1			1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	6				6
AAATT/AATTT		1			1
AGGGG/CCCCT	1				1
AAATAG/ATTTCT	1				1
AACACC/GGTGTT	1				1
AACTTC/AAGTTG	1				1
AATACG/ATTCGT	1				1
AATGGC/ATTGCC		1			1
AGATGG/ATCTCC		1			1
