Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_041022715.1/fasta/hub_GCF_041022715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           4560683
Total number of identified SSRs:                 17
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
ACC	-	-	1		1
TTA	-	-	2		2
AAAAC	1				1
AAAAT	1				1
AAATA	1				1
AATAA	1				1
TTCTT	1				1
TTTTC	1				1
ACGAAT	1				1
CCAACA			1		1
CTTCAA	1				1
GCTGCA	1				1
TGAATG	1				1
TGCCAT				1	1
TTTTTC			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAT/ATT	-	-	2		2
ACC/GGT	-	-	1		1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	2				2
AAAAT/ATTTT	3				3
AAAAAG/CTTTTT			1		1
AACACC/GGTGTT			1		1
AACTTC/AAGTTG	1				1
AATACG/ATTCGT	1				1
AATGGC/ATTGCC				1	1
AATGTG/ACATTC	1				1
AGCTGC/AGCTGC	1				1
