Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-132/megassr/results/hub_GCF_041022625.1/fasta/hub_GCF_041022625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           4702681
Total number of identified SSRs:                 26
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
5	10
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT	-	-	-		1										1
CA	-	-	-	1											1
ACC	-	-	1												1
TAA	-	-	1												1
TTA	-	-	1												1
AAAAG	1														1
AATAA	1														1
ATTAA		1													1
ATTTA	1														1
ATTTT	2														2
GTTTT	1														1
TTATT	1														1
TTTTA	1														1
TTTTC	1														1
ATTCGT	1														1
ATTTAT														1	1
GGTTGC	1														1
GTTGGT	1		1												2
TGAATG	1														1
TGCAGC	1														1
TGCCAT				1											1
TTGAAG	1														1
TTGGTG			1												1
TTTTTC			1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AT/AT	-	-	-		1										1
AAT/ATT	-	-	2												2
ACC/GGT	-	-	1												1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	2														2
AAAAT/ATTTT	5														5
AAATT/AATTT	1	1													2
AAAAAG/CTTTTT			1												1
AAATAT/ATATTT														1	1
AACACC/GGTGTT	1		2												3
AACCGC/CGGTTG	1														1
AACTTC/AAGTTG	1														1
AATACG/ATTCGT	1														1
AATGGC/ATTGCC				1											1
AATGTG/ACATTC	1														1
AGCTGC/AGCTGC	1														1
