Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_041022615.1/fasta/hub_GCF_041022615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           4618244
Total number of identified SSRs:                 24
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	11
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
TG	-	-	-	1										1
ACC	-	-	1											1
TAA	-	-	1											1
TTA	-	-	1											1
AAAAT	2													2
AAATA	1													1
AGAAA	1													1
ATTAA		1												1
ATTTT	1													1
GTTTT	1													1
TAAAT		1												1
TTATT	1													1
TTCTT	1													1
TTTTA	1													1
AAAGAA			1											1
ATTCGT	1													1
ATTTAT													1	1
CACATT	1													1
GCTGCA	1													1
GTTGGT			1											1
TGCCAT				1										1
TTGAAG	1													1
TTGGTG			1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AC/GT	-	-	-	1										1
AAT/ATT	-	-	2											2
ACC/GGT	-	-	1											1
AAAAC/GTTTT	1													1
AAAAG/CTTTT	2													2
AAAAT/ATTTT	6													6
AAATT/AATTT		2												2
AAAAAG/CTTTTT			1											1
AAATAT/ATATTT													1	1
AACACC/GGTGTT			2											2
AACTTC/AAGTTG	1													1
AATACG/ATTCGT	1													1
AATGGC/ATTGCC				1										1
AATGTG/ACATTC	1													1
AGCTGC/AGCTGC	1													1
