Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_041022565.1/fasta/hub_GCF_041022565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           4556970
Total number of identified SSRs:                 17
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
AGC	-	-	1		1
CTG	-	-	1		1
GGT	-	-	1		1
GTAGG	1				1
TAAAG	1				1
TATTT	1	1			2
TTAAC	1				1
AATAAA	1				1
ATCGAT	1				1
CAATAT	1				1
GCAGAA	1				1
TACAGC	1				1
TCAAAC			1		1
TTATGT	1				1
TTCTGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
ACC/GGT	-	-	1		1
AGC/CTG	-	-	2		2
AAAAT/ATTTT	1	1			2
AAAGT/ACTTT	1				1
AACTT/AAGTT	1				1
ACCCT/AGGGT	1				1
AAAAAT/ATTTTT	1				1
AAACAT/ATGTTT	1				1
AAACTC/AGTTTG			1		1
AAGCAG/CTGCTT	2				2
AATATC/ATATTG	1				1
ACAGCT/AGCTGT	1				1
ATATCG/ATATCG	1				1
