Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_041022515.1/fasta/hub_GCF_041022515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              109
Total size of examined sequences (bp):           4226103
Total number of identified SSRs:                 29
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	10
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GT	-	-	-	1								1
TC	-	-	-	1								1
CAT	-	-	1									1
GTG	-	-	1									1
TGA	-	-	1									1
AAAG	-	1										1
AAAAT	2											2
AAATG	1											1
AATAA	1											1
AGAAG	1											1
AGGTT	1											1
ATTTT	1											1
GTAGG	1											1
TATTT	1											1
TTAAT	1											1
ACAGCA											1	1
ATGGAA				1								1
CATTAT			1									1
GCAGAA	1											1
GCTGCA	1											1
GGGTTA	1											1
GTATCA			1									1
TATCAA	1											1
TGAGCC										1		1
TTATTT	1											1
TTGCAG	1											1
TTGTGC	1											1
TTTTCA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1								1
AG/CT	-	-	-	1								1
ACC/GGT	-	-	1									1
ATC/ATG	-	-	2									2
AAAG/CTTT	-	1										1
AAAAT/ATTTT	5											5
AAATG/ATTTC	1											1
AAATT/AATTT	1											1
AACCT/AGGTT	1											1
AAGAG/CTCTT	1											1
ACCCT/AGGGT	1											1
AAAAAT/ATTTTT	1											1
AAAATG/ATTTTC	1											1
AAATGG/ATTTCC				1								1
AACAGC/CTGTTG											1	1
AACCCT/AGGGTT	1											1
AACTGC/AGTTGC	1											1
AAGCAC/CTTGTG	1											1
AAGCAG/CTGCTT	1											1
AATATC/ATATTG	1											1
AATGAT/ATCATT			1									1
ACTGAT/AGTATC			1									1
AGCCTG/AGGCTC										1		1
AGCTGC/AGCTGC	1											1
