Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_041022485.1/fasta/hub_GCF_041022485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              10
Total size of examined sequences (bp):           4873745
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
5	4
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
AGC	-	-	1		1
ATA	-	-		1	1
CGC	-	-	1		1
CGG	-	-	1		1
CGT	-	-	1		1
CTG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1		1
GGC	-	-	1		1
TGG	-	-	1		1
ACGTC	1				1
GCGCG	1				1
GGCGC	1				1
TTGTT	1				1
CGACTT	1				1
CGCCAG	1				1
CTGGCG	1				1
GCCAGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
AAT/ATT	-	-		1	1
ACC/GGT	-	-	1		1
ACG/CGT	-	-	1		1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5		5
AAAAC/GTTTT	1				1
ACGTC/ACGTG	1				1
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	3				3
