Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_041022475.1/fasta/hub_GCF_041022475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              26
Total size of examined sequences (bp):           5575629
Total number of identified SSRs:                 19
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
GC	-	-	-	2			2
CGG	-	-	1				1
GGC	-	-	1				1
TCA	-	-	2				2
TATT	-	1					1
AAGTG			1				1
CAGCG	1						1
CCGCG	1						1
CGCTG	1						1
AACAGG				1			1
ATCCGG	1						1
CGACTT	1						1
CGCCAG	1						1
GATGGC	1						1
GCATTC						1	1
GCGCCA	1						1
TTTACA		1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	2			2
ATC/ATG	-	-	2				2
CCG/CGG	-	-	2				2
AAAT/ATTT	-	1					1
AAGTG/ACTTC			1				1
AGCGC/CGCTG	2						2
CCGCG/CGCGG	1						1
AAATGT/ACATTT		1					1
AACAGG/CCTGTT				1			1
AAGTCG/ACTTCG	1						1
AATGCG/ATTCGC						1	1
AGCGCC/CGCTGG	2						2
ATCCGG/ATCCGG	1						1
ATCGCC/ATGGCG	1						1
