Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-129/megassr/results/hub_GCF_041022415.1/fasta/hub_GCF_041022415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           4616645
Total number of identified SSRs:                 21
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	9
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CA	-	-	-	1										1
ACC	-	-	1											1
TAA	-	-	1											1
TTA	-	-	1											1
AAAAC	1													1
AAAAG	1													1
AAAAT	1													1
AAATA	1													1
AGAAA	1													1
ATTAA		1												1
ATTTT	1													1
TTATT	2													2
AAAGAA			1											1
AATGGC				1										1
ACGAAT	1													1
ATTTAT													1	1
CACATT	1													1
CCAACA			1											1
GCTGCA	1													1
TTGAAG	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AC/GT	-	-	-	1										1
AAT/ATT	-	-	2											2
ACC/GGT	-	-	1											1
AAAAC/GTTTT	1													1
AAAAG/CTTTT	2													2
AAAAT/ATTTT	5													5
AAATT/AATTT		1												1
AAAAAG/CTTTTT			1											1
AAATAT/ATATTT													1	1
AACACC/GGTGTT			1											1
AACTTC/AAGTTG	1													1
AATACG/ATTCGT	1													1
AATGGC/ATTGCC				1										1
AATGTG/ACATTC	1													1
AGCTGC/AGCTGC	1													1
