Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_041022295.1/fasta/hub_GCF_041022295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           4316653
Total number of identified SSRs:                 13
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	3
5	7
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
CAAG	-	1																	1
TAAA	-																	1	1
TTAA	-	1																	1
AAAAT	3																		3
AATTT	1																		1
ATTTA	1																		1
CTTCT		1																	1
TTTTC	1																		1
ACTTGA						1													1
ACTTGC			1																1
ATTATC		1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AAAT/ATTT	-																	1	1
AAGC/CTTG	-	1																	1
AATT/AATT	-	1																	1
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	3																		3
AAATT/AATTT	2																		2
AAGAG/CTCTT		1																	1
AACTTG/AAGTTC						1													1
AAGTGC/ACTTGC			1																1
AATGAT/ATCATT		1																	1
