Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-123/megassr/results/hub_GCF_041022275.1/fasta/hub_GCF_041022275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           4815495
Total number of identified SSRs:                 22
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	4
4	1
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
CG	-	-	-															1	1
TA	-	-	-	2															2
ACC	-	-	1																1
CAG	-	-	1																1
CCG	-	-			1														1
TGC	-	-	1																1
ATTT	-	1																	1
AAATG	1																		1
GTAGG	1																		1
TAAAG	1																		1
TAATA	1																		1
TATGT	1																		1
TATTT	1																		1
AAGCAG	1																		1
ATATTG	1																		1
ATCGAT	1																		1
CTTCTG	1																		1
TATTGA	1																		1
TCAAAC						1													1
TTAATT				1															1
TTTTTA			1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AT/AT	-	-	-	2															2
CG/CG	-	-	-															1	1
ACC/GGT	-	-	1																1
AGC/CTG	-	-	2																2
CCG/CGG	-	-			1														1
AAAT/ATTT	-	1																	1
AAAAT/ATTTT	1																		1
AAAGT/ACTTT	1																		1
AAATG/ATTTC	1																		1
AACAT/ATGTT	1																		1
AATAT/ATATT	1																		1
ACCCT/AGGGT	1																		1
AAAAAT/ATTTTT			1																1
AAAATT/AATTTT				1															1
AAACTC/AGTTTG						1													1
AAGCAG/CTGCTT	2																		2
AATATC/ATATTG	2																		2
ATATCG/ATATCG	1																		1
