Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_041022185.1/fasta/hub_GCF_041022185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           4427086
Total number of identified SSRs:                 16
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	3
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GCG	-	-	1						1
CAAT	-							1	1
TTAA	-		1						1
TTAG	-							1	1
AAAAT	2								2
AATTT		1							1
ACTTA			1						1
ATTTA	1								1
TTTTC	1								1
AACCTG	1								1
ACCCTG	1								1
ATTAGC	1								1
GCGAGG	1								1
TGAAGG			1						1
TTCAAG								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CCG/CGG	-	-	1						1
AACT/AGTT	-							1	1
AATC/ATTG	-							1	1
AATT/AATT	-		1						1
AAAAG/CTTTT	1								1
AAAAT/ATTTT	2								2
AAATT/AATTT	1	1							2
AACTT/AAGTT			1						1
AACCTG/AGGTTC	1								1
AACTTG/AAGTTC								1	1
AAGGTG/ACCTTC			1						1
AATGCT/AGCATT	1								1
ACCCTG/AGGGTC	1								1
AGGGCG/CCCTCG	1								1
