Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCF_041022175.1/fasta/hub_GCF_041022175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              355
Total size of examined sequences (bp):           4144417
Total number of identified SSRs:                 15
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
GT	-	-	-	1									1
AAT	-	-	1										1
AGAT	-		1						1				2
AAATA	1												1
GGGTT	1												1
TTAAT	1												1
TTTTA	1												1
ACCAGC					1								1
CATGAC	1												1
CTGTTG												1	1
GATAAG				1									1
GCGAGG	1												1
TAGCAA		1											1
TGGAGC								1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	1									1
AAT/ATT	-	-	1										1
AGAT/ATCT	-		1						1				2
AAAAT/ATTTT	2												2
AAATT/AATTT	1												1
AACCC/GGGTT	1												1
AACAGC/CTGTTG												1	1
AAGGAT/ATCCTT				1									1
AATAGC/ATTGCT		1											1
ACCAGC/CTGGTG					1								1
ACCATG/ATGGTC	1												1
AGCTCC/AGCTGG								1					1
AGGGCG/CCCTCG	1												1
