Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCF_040760055.1/fasta/hub_GCF_040760055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              124
Total size of examined sequences (bp):           4967926
Total number of identified SSRs:                 30
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	6
3	6
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										2						1																															3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																														1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1										1																										1								3
CG	-	-	-	2		1																																																										3
GC	-	-	-	2																																																												2
TA	-	-	-	1																																																												1
CGG	-	-	1																																																													1
GCC	-	-	1																																																													1
GCG	-	-	3																																																													3
GCT	-	-	1																																																													1
GCCA	-	1																																																														1
AGGGA	1																																																															1
AGTTG	1																																																															1
CCACG	1																																																															1
CGCGC	1																																																															1
GGCGC	1																																																															1
CGACTT	1																																																															1
CTGGCG	1																																																															1
GCCAGC	1																																																															1
TAAAAA	1																																																															1
TGGTCG									1																																																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1										1																										1								3
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										2						1																														1	4
AT/AT	-	-	-	1																																																												1
CG/CG	-	-	-	4		1																																																										5
AGC/CTG	-	-	1																																																													1
CCG/CGG	-	-	5																																																													5
AGCC/CTGG	-	1																																																														1
AACTC/AGTTG	1																																																															1
AAGGG/CCCTT	1																																																															1
ACGCC/CGTGG	1																																																															1
CCGCG/CGCGG	2																																																															2
AAAAAT/ATTTTT	1																																																															1
AAGTCG/ACTTCG	1																																																															1
ACCACG/CGTGGT									1																																																							1
AGCGCC/CGCTGG	2																																																															2
