Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCF_040514015.1/fasta/hub_GCF_040514015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           4775428
Total number of identified SSRs:                 27
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
4	2
5	8
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	2				2
GC	-	-	-	1				1
CCG	-	-	3					3
CGG	-	-	1					1
GCA	-	-					1	1
GCC	-	-	1					1
GCG	-	-	1					1
GCT	-	-	1					1
GCCA	-	1						1
TATT	-	1						1
AAATA	1							1
CAGCG	1							1
CGCTG	1							1
GCGCA	1							1
GCGCG	1							1
GGCGC	1							1
GGCTG		1						1
TATCG	1							1
ACCGAG		1						1
ATTAGC	1							1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1
TGGTCG							1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	3				3
AGC/CTG	-	-	1				1	2
CCG/CGG	-	-	6					6
AAAT/ATTT	-	1						1
AGCC/CTGG	-	1						1
AAAAT/ATTTT	1							1
ACGAT/ATCGT	1							1
AGCCC/CTGGG		1						1
AGCGC/CGCTG	3							3
CCGCG/CGCGG	2							2
AAGTCG/ACTTCG	1							1
AATGCT/AGCATT	1							1
ACCACG/CGTGGT							1	1
ACCGAG/CGGTCT		1						1
AGCGCC/CGCTGG	2							2
