Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCF_040409895.1/fasta/hub_GCF_040409895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           2504756
Total number of identified SSRs:                 4
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	1
5	1
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CAA	-	-	1	1
TTTA	-	1		1
AAAAT	1			1
TGCTGT	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAC/GTT	-	-	1	1
AAAT/ATTT	-	1		1
AAAAT/ATTTT	1			1
AACAGC/CTGTTG	1			1
