Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-100/megassr/results/hub_GCF_040409885.1/fasta/hub_GCF_040409885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2780266
Total number of identified SSRs:                 17
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	2
4	1
5	1
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT	-	-	-	1															1
TA	-	-	-	1															1
GCA	-	-	1																1
TGC	-	-	1																1
TTTA	-	1																	1
AAAAT	1																		1
GACGCA	2																		2
GACGCT	2																		2
GCATCG	1																		1
GCCGAT	2																		2
GCGTCA	1																		1
TCTGCG	1																		1
TGCTGT	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-	2															2
AGC/CTG	-	-	2																2
AAAT/ATTT	-	1																	1
AAAAT/ATTTT	1																		1
AACAGC/CTGTTG	1																		1
ACGCAG/CGTCTG	3																		3
ACGCTG/AGCGTC	3																		3
ATCGGC/ATGCCG	3																		3
