Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCF_040281575.1/fasta/hub_GCF_040281575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           4666251
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	5		1				6
GC	-	-	-	1						1
CCG	-	-	2							2
CGC	-	-	1							1
CGG	-	-	1							1
CTG	-	-					1			1
GCG	-	-	2							2
GCT	-	-	1							1
GGC	-	-	1							1
CGCGC	1									1
GCGCC	1									1
CCATGA									1	1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	6		1				7
AGC/CTG	-	-	1				1			2
CCG/CGG	-	-	7							7
CCGCG/CGCGG	2									2
AAGTCG/ACTTCG	1									1
ACCATG/ATGGTC									1	1
AGCGCC/CGCTGG	2									2
