Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCF_040281535.1/fasta/hub_GCF_040281535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              65
Total size of examined sequences (bp):           4777691
Total number of identified SSRs:                 23
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	8
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2		1	3
GC	-	-	-	2			2
CCG	-	-	1				1
CGG	-	-	2				2
GCG	-	-	3				3
GCT	-	-	1				1
TTA	-	-	1				1
TATT	-	1					1
TGGC	-	1					1
CGCGC	1						1
GGCGC	1						1
AAGCGT	1						1
CGACTT	1						1
CTGGCG	1						1
GCTGGC	1						1
TGGTCG					1		1
TGTATT			1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4		1	5
AAT/ATT	-	-	1				1
AGC/CTG	-	-	1				1
CCG/CGG	-	-	6				6
AAAT/ATTT	-	1					1
AGCC/CTGG	-	1					1
CCGCG/CGCGG	2						2
AAATAC/ATTTGT			1				1
AAGCGT/ACGCTT	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT					1		1
AGCGCC/CGCTGG	2						2
