Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_040281485.1/fasta/hub_GCF_040281485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              90
Total size of examined sequences (bp):           4589122
Total number of identified SSRs:                 20
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CG	-	-	-	1		1				2
GC	-	-	-	3						3
AGC	-	-	1							1
CGC	-	-	1							1
CGG	-	-	1							1
GCC	-	-	1							1
GCG	-	-	1							1
TGG	-	-	1							1
TTA	-	-	1							1
CGCGG	1									1
GCGCC	1									1
CATCCT			1							1
CGCCAG	1									1
GAAGTC	1									1
GCTGGC	1									1
TGGTCG									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	4		1				5
AAT/ATT	-	-	1							1
ACC/GGT	-	-	1							1
AGC/CTG	-	-	1							1
CCG/CGG	-	-	4							4
CCGCG/CGCGG	2									2
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
AGCGCC/CGCTGG	2									2
AGGATG/ATCCTC			1							1
